Package: Rtapas 1.2

Rtapas: Random Tanglegram Partitions

Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See "Llaberia-Robledillo et al. (2023, <doi:10.1093/sysbio/syad016>)".

Authors:Mar Llaberia-Robledillo [aut, cre, cph], Juan A. Balbuena [aut, cph], José Ignacio Lucas-Lledó [aut, cph], Oscar Alejandro Pérez-Escobar [aut, cph]

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Peer review:

Bug tracker:https://github.com/mllaberia/rtapas/issues

On CRAN:

15 exports 5 stars 1.33 score 45 dependencies 9 scripts 227 downloads

Last updated 4 months agofrom:df64cc56b0. Checks:OK: 7. Indexed: yes.

Exports:assoc_matgeo_Dgini_cigini_RSVlink_freqlinkf_CImax_congmax_incongone2one_fpaco_ssparaFprob_statistictangle_gramtrimHS_maxCtrimHS_maxI

Dependencies:apecliclusterclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdistorydoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmgcvmnormtnlmenumDerivoptimParallelpacoparallellypermutephangornphytoolspkgconfigplyrquadprogRcpprlangscatterplot3dstringistringrvctrsvegan