Package: Rtapas 1.2

Rtapas: Random Tanglegram Partitions

Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See "Llaberia-Robledillo et al. (2023, <doi:10.1093/sysbio/syad016>)".

Authors:Mar Llaberia-Robledillo [aut, cre, cph], Juan A. Balbuena [aut, cph], José Ignacio Lucas-Lledó [aut, cph], Oscar Alejandro Pérez-Escobar [aut, cph]

Rtapas_1.2.tar.gz
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Rtapas.pdf |Rtapas.html✨
Rtapas/json (API)

# Install 'Rtapas' in R:
install.packages('Rtapas', repos = c('https://mllaberia.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mllaberia/rtapas/issues

Datasets:

On CRAN:

Conda:

3.70 score 5 stars 9 scripts 179 downloads 15 exports 45 dependencies

Last updated 10 months agofrom:df64cc56b0. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 11 2025
R-4.5-winOKMar 11 2025
R-4.5-macOKMar 11 2025
R-4.5-linuxOKMar 11 2025
R-4.4-winOKMar 11 2025
R-4.4-macOKMar 11 2025
R-4.4-linuxOKMar 11 2025
R-4.3-winOKMar 11 2025
R-4.3-macOKMar 11 2025

Exports:assoc_matgeo_Dgini_cigini_RSVlink_freqlinkf_CImax_congmax_incongone2one_fpaco_ssparaFprob_statistictangle_gramtrimHS_maxCtrimHS_maxI

Dependencies:apecliclusterclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdistorydoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmgcvmnormtnlmenumDerivoptimParallelpacoparallellypermutephangornphytoolspkgconfigplyrquadprogRcpprlangscatterplot3dstringistringrvctrsvegan